12 Accounting Mistakes New Businesses Make
Starting a business is challenging enough without your bookkeeping quietly undermining your cash flow, tax position, or credibility with lenders and suppliers. Yet for many new UK businesses, accounting problems do not arrive with flashing warning lights. They build up slowly in the background, often unnoticed until a tax bill, missed deadline, or funding application brings them into sharp focus.
The good news is that most new business accounting problems are not caused by complex tax rules or advanced financial decisions. They usually come from a small number of predictable mistakes made early on, often due to time pressure, lack of guidance, or trying to handle everything alone. Better still, every one of these mistakes is avoidable with simple habits, clear processes, and the right support.
This guide breaks down the 12 most common accounting mistakes new UK businesses make, explains what they can really cost you, and shows you exactly how to avoid them. Along the way, you will find practical tips, official resources, and real-world advice designed to help you stay compliant, tax-efficient, and financially confident from day one.
Whether you are a sole trader, freelancer, or running a limited company, getting these fundamentals right early can save you thousands of pounds, countless hours of stress, and difficult conversations with HMRC later.
Below are the accounting mistakes we see most often when working with new businesses across the UK, and how to make sure they never become your problem.
1) Mixing Business and Personal Money
One of the most common accounting mistakes new businesses make is mixing personal and business finances. It often starts innocently, using a personal bank account to receive early payments, paying for business costs on a personal card, or dipping into the business account for everyday spending. Over time, this creates confusion that is surprisingly difficult to untangle.
What this looks like in practice
- Using one bank account for both personal and business transactions
- Paying household or personal expenses directly from the business account
- Business income landing in a personal current account
- Ad-hoc transfers between accounts with no clear purpose recorded
Why it is a problem
Blurring the line between personal and business money leads to messy records, missed expense claims, and extra time spent explaining transactions to your accountant. It also increases the risk of mistakes on your tax return and can raise unnecessary questions from HMRC.
For limited companies, the risks are even higher. Personal spending from the company account can create a director’s loan account without you realising it. If not managed properly, this can trigger additional tax charges, unexpected repayments, or even penalties.
From a practical point of view, lenders, investors, and grant providers also expect clean financial records. Mixed finances make your business look disorganised and can weaken funding applications or credit checks.
How to fix it
- Open a dedicated business bank account and use it consistently for all business income and expenses. This is essential for limited companies and strongly recommended for sole traders.
- Create a clear payment routine. Sole traders should take regular owner drawings, while limited company directors should use a structured salary and dividend approach instead of random transfers.
- Reimburse personal spending properly. If you pay for a business expense personally, keep the receipt and reimburse yourself through the business with a clear description.
Practical tip: If you are just starting out, set a simple rule: business money only moves in or out of the business account for a clearly labelled reason. If you cannot explain a transaction in one sentence, it probably does not belong there.
Separating your finances early is one of the simplest steps you can take to reduce stress, save accounting fees, and stay on the right side of the rules. It also gives you a far clearer picture of how your business is actually performing
2) Not Keeping Proper Records From Day One
Many new business owners tell themselves they will deal with the paperwork later. In reality, “later” usually means year end, a looming tax deadline, and a frantic search through emails, bank statements, and a shoebox full of receipts. Poor record-keeping is one of the fastest ways to turn a manageable accounting task into a stressful and expensive problem.
What this looks like in practice
- Saving invoices and receipts sporadically or not at all
- Relying on bank statements alone to reconstruct income and costs
- Forgetting what certain transactions were for months later
- Trying to “catch up” everything in one go at the end of the tax year
Why it is a problem
Without proper records, it becomes extremely easy to miss allowable expenses, meaning you could end up paying more tax than necessary. It also makes it harder to prove your figures if they are ever queried by HMRC , increasing the risk of delays, adjustments, or penalties.
Poor records also cost you time and money. Rebuilding accounts months later takes far longer than recording transactions as they happen, and accountants often have to charge more to clean up incomplete or disorganised data.
Beyond tax, weak record-keeping makes it difficult to understand how your business is performing. You cannot reliably track cash flow, profitability, or growth if the underlying numbers are incomplete or inconsistent.
Your legal obligations in the UK
If you are self-employed or a sole trader, you are legally required to keep accurate records for your Self Assessment tax return. This includes income, expenses, invoices, receipts, and bank records, and they must be retained for the required period as set out on GOV.UK.
If you run a limited company, the rules are stricter. Companies must keep proper accounting records, including details of all money received and spent, assets and liabilities, invoices, receipts, and supporting documentation. These records must be kept for specific minimum retention periods and be available if requested.
How to fix it
- Record income and expenses as they happen. A few minutes each week is far easier than hours of reconstruction later.
- Keep all supporting evidence, including invoices, receipts, bank statements, and proof of payment, whether digital or paper.
- Use a consistent system. This could be accounting software, spreadsheets, or a simple digital filing structure, as long as it is maintained properly.
Practical tip: If you cannot back up a figure with evidence, assume it may not be allowed. Good records protect you just as much as they save you tax.
Getting your record-keeping right from day one is not about being perfect. It is about being consistent. That consistency makes compliance easier, reduces costs, and gives you confidence that your numbers will stand up if they are ever reviewed.
3) Missing Filing Deadlines (Companies House and HMRC)
Missing accounting and tax deadlines is one of the most stressful mistakes new business owners make, and one of the most avoidable. It usually does not happen because someone is careless, but because they simply did not realise how many different deadlines exist, or that they fall at different times and are handled by different bodies.
What this looks like in practice
- Assuming all accounts and tax returns are due on the same date
- Only discovering a deadline after a reminder or penalty notice arrives
- Rushing accounts or tax returns close to the deadline
- Confusing personal Self Assessment deadlines with company obligations
Why it is a problem
Late filings almost always result in penalties from HMRC and repeated delays can lead to escalating fines. In more serious cases, persistent non-compliance can trigger enforcement action or strike-off warnings.
There is also a reputational cost. Late accounts filed at Companies House are visible to lenders, suppliers, and potential partners. This can weaken finance applications, slow down credit approvals, and raise unnecessary concerns about how well the business is being run.
On a personal level, missed deadlines create avoidable stress. Dealing with penalties, appeals, and last-minute submissions takes far more time and energy than staying on top of dates in the first place.
Key UK deadlines new businesses often miss
One of the most common causes of missed filings is assuming everything is due at once. In reality, company accounts deadlines and Corporation Tax obligations are separate and do not always align.
- Statutory accounts must be filed with Companies House by their own deadline, which is usually different from your tax return deadline.
- Corporation Tax payments are due before the Company Tax Return is filed, not after.
- Company Tax Returns must be submitted to HMRC within the required timeframe, even if tax has already been paid.
- Confirmation Statements must be filed annually within the permitted window to keep company details up to date.
How to fix it
- Put all deadlines in your diary as soon as you incorporate, including Companies House filing dates, Corporation Tax payment deadlines, and Company Tax Return submission dates.
- Understand that not all deadlines are the same. Treat each obligation separately and plan ahead for them.
- File early where possible. Submitting accounts and returns ahead of time reduces pressure and leaves room to correct errors.
Practical tip: If you rely on reminders to tell you something is due, you are already too late. Treat deadlines as fixed business commitments, not optional admin tasks.
Staying on top of filing deadlines is not just about avoiding penalties. It protects your business reputation, improves your chances of securing finance, and gives you peace of mind that nothing important is about to slip through the cracks.
4) Forgetting About Cash Flow (Profit Is Not Cash)
One of the most confusing realities for new business owners is discovering that a business can be profitable on paper and still struggle to pay the bills. Profit shows what you have earned over time. Cash flow shows what money is actually available right now. Mixing the two up is a fast route to stress.
What this looks like in practice
- Seeing healthy profits in your accounts but having an empty bank balance
- Waiting on unpaid invoices while expenses continue to leave the account
- Relying on overdrafts or personal funds to cover short-term gaps
- Being surprised by VAT, PAYE, or tax bills when they fall due
Why it is a problem
Cash flow problems can bring an otherwise viable business to a halt. VAT, PAYE, suppliers, and tax bills are all due on fixed dates and they do not take into account whether your customers have paid you yet. Late or slow payments can quickly create a domino effect, even if your sales figures look strong.
Poor cash flow management is also one of the main reasons businesses fall behind with payments to HMRC, miss deadlines, or take on unnecessary debt. Over time, this adds pressure and limits your ability to invest or grow.
How to fix it
- Do a simple weekly cash check. Review money coming in, money going out, and what is expected over the next 30, 60, and 90 days.
- Invoice promptly and follow up consistently. Send invoices as soon as work is completed, chase overdue payments politely, and consider part-payment upfront for service-based work.
- Ring-fence money for tax. Move estimated VAT and tax amounts into a separate “tax pot” account so the cash is there when it is needed.
Practical tip: If you would not be comfortable spending it today, it should not be treated as available cash. Always assume part of your balance belongs to VAT or future tax.
Understanding cash flow early gives you control. It helps you plan ahead, avoid nasty surprises, and make decisions based on what the business can actually afford, not just what the profit figure suggests.
5) Not Tracking VAT Properly (or Registering Too Late)
VAT is one of the areas that catches new businesses out most often, usually not through deliberate avoidance, but through simple lack of awareness. Many businesses drift over the VAT threshold without noticing, while others register but misunderstand what actually counts as taxable turnover.
What this looks like in practice
- Crossing the VAT threshold without realising it
- Assuming VAT is based on profit rather than turnover
- Not knowing which sales count as taxable for VAT purposes
- Charging customers VAT too late or not at all after registration should have happened
Why it is a problem
Late VAT registration can be expensive. If you should have registered earlier, HMRC can require you to pay VAT retrospectively from the date you should have registered, even if you did not charge it to your customers at the time. This often means the VAT comes straight out of your margin.
In addition to the VAT itself, there may also be penalties and interest for late registration. For growing businesses, this can turn what felt like a positive milestone into a serious cash flow shock.
Understanding the VAT threshold
VAT registration in the UK is based on your rolling 12-month taxable turnover, not your financial year or calendar year. This is a key detail many new business owners miss.
As of 1 April 2024, the VAT registration threshold increased to £90,000. If your taxable turnover exceeds this amount in any rolling 12-month period, you must register for VAT.
How to fix it
- Monitor your rolling 12-month turnover monthly, not just at year end. This gives you early warning if you are approaching the threshold.
- Understand what counts as taxable turnover. Not all income is treated the same for VAT, and mistakes here are common.
- Get advice early if you are close to the threshold. In some cases, voluntary VAT registration can be beneficial. In others, it can increase prices and reduce competitiveness.
Practical tip: If you are growing quickly, assume VAT will become an issue sooner than you expect. Planning for it early is far less painful than dealing with a backdated bill.
Handled properly, VAT is manageable. Ignored or misunderstood, it can create sudden and avoidable financial pressure. The key is visibility, regular monitoring, and knowing when to ask for advice.
6) Being VAT-Registered but Not Set Up for Making Tax Digital
Being VAT-registered is not just about charging VAT and submitting a return every quarter. For most VAT-registered businesses, VAT also comes with Making Tax Digital (MTD) for VAT requirements. The common mistake is thinking you can keep everything in spreadsheets and then manually type the totals into the VAT portal, or assuming your software setup is “probably fine” without checking whether it actually meets the rules.
What this looks like in practice
- Tracking VAT in spreadsheets and manually copy/pasting figures into HMRC systems
- Using accounting software, but not setting up the VAT scheme, rates, or reporting properly
- Using multiple systems (for example, EPOS, invoicing tool, spreadsheet) with manual re-keying between them
- Realising you are not compliant when the VAT deadline is a few days away
Why it is a problem
MTD for VAT generally requires you to keep VAT records digitally and submit VAT Returns using compatible software. HMRC guidance makes clear that VAT records and returns should be managed through compatible software rather than manual entry into the VAT portal.
A rushed, last-minute setup often leads to incorrect VAT figures, missed deadlines, and avoidable stress. It can also create ongoing problems, such as unreliable VAT reports, inconsistent treatment of expenses, or broken digital links between systems.
What “compatible software” and “digital links” actually mean
Compatible software is software that can keep digital VAT records and submit your VAT Return to HMRC. HMRC maintains a list of recognised options, including full accounting software and bridging solutions where appropriate.
If you use more than one tool to maintain your VAT records, the transfer of VAT data between them should be done via digital links, not manual copy/paste. VAT Notice 700/22 sets out the digital record keeping and digital links requirements in more detail.
How to fix it
- Choose functional compatible software early and make sure it is set up correctly for your VAT scheme, rates, and reporting periods. Use HMRC’s recognised software list as your starting point.
- Set up digital links properly if you are using multiple systems (for example, spreadsheets plus bridging software, or separate invoicing and bookkeeping tools). Avoid manual re-keying wherever VAT data is transferred.
- Do not leave the software decision until VAT deadline week. Build in time for setup, testing, and a dry run VAT return so you are not troubleshooting under pressure.
Practical tip: Before your first MTD VAT submission, run a test check: can you trace every box on the VAT Return back to digital records, without manual copy/paste steps? If not, fix the process now, not the night before filing.
MTD compliance is easiest when your process is simple and consistent. Once the software is set up correctly, most businesses find VAT becomes far more routine and far less stressful.










